#include <fix_point_gaussian_dna.h>

Inheritance diagram for libMesh::FixPointGaussianDNA:

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Public Member Functions
	FixPointGaussianDNA (PMLinearImplicitSystem &pm_sys)

	~FixPointGaussianDNA ()

void	print_fix ()

void	initPointParticleType ()

void	initParams ()
	Check if num of parameters are correct. More...

void	compute ()

Public Member Functions inherited from libMesh::FixPoint
	FixPoint (PMLinearImplicitSystem &pm_sys)
	Constructor for a system with point particles. More...

virtual	~FixPoint ()

void	initParticleType ()

void	check_walls ()

void	check_walls_pbcCount ()

Public Member Functions inherited from libMesh::Fix
	Fix (PMLinearImplicitSystem &pm_sys, ElasticitySystem &el_sys)
	Constructor for a system with elastic structures (finite size particles) More...

	Fix (PMLinearImplicitSystem &pm_sys)
	Constructor for a system with point particles. More...

void	initialization ()

virtual	~Fix ()
	Destructor. More...

virtual void	check_pbc_pre_fix ()

virtual void	check_pbc_post_fix ()

virtual void	sync_node_to_pointmesh ()

Additional Inherited Members
Public Types inherited from libMesh::Fix
typedef std::string	type_force_name

typedef std::vector< Real >	type_force_parameter

typedef std::pair< type_force_name, type_force_parameter >	type_force

Public Attributes inherited from libMesh::Fix
PMLinearImplicitSystem *	pm_system

PointMesh< 3 > *	point_mesh

unsigned int	dim

unsigned int	out_domain_counter = 0

std::string	force_type

std::vector< Real >	force_params

FixBase	fix_base

std::string	particle_type

Real	bead_r

std::size_t	num_points

std::vector< PointParticle * >	point_particles

Real	kBT

const Real	PI = libMesh::pi

PMPeriodicBoundary *	pbc

std::string	wall_type

std::vector< Real >	wall_params

Point	box_min

Point	box_max

Point	box_len

std::vector< bool >	periodic

std::vector< bool >	inlet

Protected Attributes inherited from libMesh::FixPoint
std::string	point_particle_model

Constructor & Destructor Documentation

FixPointGaussianDNA::FixPointGaussianDNA ( PMLinearImplicitSystem & pm_sys )

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libMesh::FixPointGaussianDNA::~FixPointGaussianDNA ( )

inline

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Member Function Documentation

void FixPointGaussianDNA::compute ( )

virtual

Compute force field attach it to particles /*! User-defined function for reinitializing the force field at each time step The velocities of all beads are given (for calculating friction) This function is the same to reinit_force_field() unless velocities are given, i.e., friction need to be calculated

Reimplemented from libMesh::Fix.

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