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Parallel Finite Element - General geometry Ewald-like Method
Part of Continuum-particle Simulation Suite under MICCOM
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Parallel Finite Element - General geometry Ewald-like Method
Part of Continuum-particle Simulation Suite under MICCOM
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This is the complete list of members for libMesh::PolymerChain, including all inherited members.
| add_bead(const Point &pt, const PointType point_type, const int parent_id, const std::vector< Real > &rot_vec) | libMesh::PolymerChain | |
| bead_vector(const Point &bead0, const Point &bead1) const | libMesh::PolymerChain | |
| beads() | libMesh::PolymerChain | inline |
| bonds() | libMesh::PolymerChain | inline |
| chain_id() const | libMesh::PolymerChain | inline |
| check_chain(const Real &Ls) | libMesh::PolymerChain | |
| compute_center_of_mass(const std::vector< Real > &lvec, std::vector< Point > ¢er) const | libMesh::PolymerChain | |
| compute_chain_length() | libMesh::PolymerChain | |
| compute_chain_stretch(const std::vector< Real > &lvec, std::vector< Point > &stretch) const | libMesh::PolymerChain | |
| compute_mean_square_displacement(const std::vector< Point > &R0, const std::vector< Point > &Rt, Point &msd) const | libMesh::PolymerChain | |
| compute_radius_of_gyration(const std::vector< Real > &lvec, const std::vector< Point > ¢er, std::vector< Real > &RgSqrt) const | libMesh::PolymerChain | |
| end_to_end_vector() const | libMesh::PolymerChain | |
| end_to_end_vector_square() const | libMesh::PolymerChain | |
| generate_polymer_chain(const Point pt0, const std::size_t Nb, const Real Ls, const Point &bbox_min, const Point &bbox_max, const std::string &filename) | libMesh::PolymerChain | |
| generate_polymer_chains(const unsigned int n_beads, const unsigned int n_chains, const Real init_bondLength, const Point init_bbox_min, const Point init_bbox_max, const std::string &filename, unsigned int comm_in_rank) | libMesh::PolymerChain | |
| initial_bead_center_of_mass(std::vector< Point > ¢er0) const | libMesh::PolymerChain | |
| initial_chain_center_of_mass(std::vector< Point > ¢er0) const | libMesh::PolymerChain | |
| n_beads() const | libMesh::PolymerChain | inline |
| n_bonds() const | libMesh::PolymerChain | inline |
| n_chains() const | libMesh::PolymerChain | inline |
| n_springs() const | libMesh::PolymerChain | inline |
| PolymerChain(const std::size_t chain_id) | libMesh::PolymerChain | |
| PolymerChain(const std::size_t chain_id, PMPeriodicBoundary &pm_pb) | libMesh::PolymerChain | |
| print_info() const | libMesh::PolymerChain | |
| read_data(const std::string &filename) | libMesh::PolymerChain | |
| read_data_csv(const std::string &filename) | libMesh::PolymerChain | |
| read_data_pizza(const std::string &filename) | libMesh::PolymerChain | |
| read_data_vtk(const std::string &filename) | libMesh::PolymerChain | |
| read_pbc_count() | libMesh::PolymerChain | |
| spring_vector(const unsigned int i) const | libMesh::PolymerChain | |
| write_bead(const unsigned int &step_id, const unsigned int &o_step, const Real &real_time, const std::vector< Point > ¢er0, const std::vector< Real > &lvec, const std::vector< std::string > &output_file, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_bead_com(const unsigned int &step_id, const unsigned int &o_step, const std::vector< Real > &lvec, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_bead_msd(const unsigned int &step_id, const unsigned int &o_step, const std::vector< Point > ¢er0, const std::vector< Real > &lvec, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_bead_trajectory(const unsigned int &o_step, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_polymer_chain(const unsigned int &step_id, const unsigned int &o_step, const Real &real_time, const std::vector< Point > ¢er0, const std::vector< Real > &lvec, std::vector< std::string > &output_file, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_polymer_com(const unsigned int &step_id, const unsigned int &o_step, const std::vector< Real > &lvec, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_polymer_msd(const unsigned int &step_id, const unsigned int &o_step, const std::vector< Point > ¢er0, const std::vector< Real > &lvec, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_polymer_rog(const unsigned int &step_id, const unsigned int &o_step, const std::vector< Real > &lvec, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_polymer_stretch(const unsigned int &step_id, const unsigned int &o_step, const std::vector< Real > &lvec, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_polymer_trajectory(const unsigned int &o_step, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_time(const unsigned int &step_id, const unsigned int &o_step, const Real &real_time, unsigned int comm_in_rank) const | libMesh::PolymerChain | |
| write_unfolded_com(const std::string &filename) const | libMesh::PolymerChain | |
| write_unfolded_polymer_chain(const std::string &filename) const | libMesh::PolymerChain | |
| ~PolymerChain() | libMesh::PolymerChain |
1.8.11
